Windows 7 won’t boot, doesn’t see system

I have been doing some installs and I’ve run Windows 7 in clear mode. Then I wanted to get back to normal went to MSConfig and clicked "run normally", after that I’m left with a 0xc000000e error. Windows 7 disk wont help as it seems boot loader doesn’t see system at all.

I went to use bootrec from command line and with /OsScan it finds E:\Windows but it should be C:\Windows.

lis disk

Shows 2 disks, drive 0 (where all is) and drive 1 (with just files)

lis part

shows 4 partitions

• vol 0 F UDF DVD-ROM
• vol 1 C (says resctricted access) NTFS 100 mb
• vol 2 E (thats where actually system was)
• vol 3 D (the other hard drive)

Not sure why C is 100mb and has C, while whole disk was C which is now E.

Osfound function finds windows on E:\Windows which normally was C:\Windows

Right now the error after reboot is:

File: \Boot\BCD not found