Debian 10.2 Boot Error - Kernel Panic not syncing, attempted to kill init! exitcode 0x00000007

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Upon restarting Debian, I received a boot error involving the error in the title and that was similar to the below log output from the kernel log, but including a call trace retyped below. I was able to reboot into an Ubuntu partition on the same drive, which would seem to indicate it is not a hardware problem, which has allowed me to retrieve the system and kernel logs from the boot attempt.

Since the last time I successfully booted into Debian, I have made the following changes:

  • Installed the packages bridge-utils, nm-tray (with dependencies), ebtables, and arp-scan. These did make some changes to Libc, which I found referenced in a post about a similar error on a centOS server where the disk was failing.

  • I attempted to set up a bridged network connection between my wireless network card and my ethernet card. This failed and the connection was later deleted.

  • Installed several packages for the R programming language.

I have attempted to boot from the GRUB advanced options for Debian page and neither of the two available has succeeded.

I also, in an attempt to fix the problem, attempted to manually delete the above installed Debian packages by removing them from /var/lib/dpkg/info and the entries from the /var/lib/apt/extended_states file.

### From the Kernel Log ###
Jan 29 20:49:32 SuperLinux kernel: [160937.032249] ata2.00: exception Emask 0x0 SAct 0x6000 SErr 0x0 action 0x0
Jan 29 20:49:32 SuperLinux kernel: [160937.032257] ata2.00: irq_stat 0x40000001
Jan 29 20:49:32 SuperLinux kernel: [160937.032263] ata2.00: failed command: READ FPDMA QUEUED
Jan 29 20:49:32 SuperLinux kernel: [160937.032272] ata2.00: cmd 60/00:68:e8:1e:76/01:00:00:00:00/40 tag 13 ncq dma 131072 in
Jan 29 20:49:32 SuperLinux kernel: [160937.032272]          res 41/40:00:f0:1e:76/00:01:00:00:00/40 Emask 0x409 (media error) <F>
Jan 29 20:49:32 SuperLinux kernel: [160937.032277] ata2.00: status: { DRDY ERR }
Jan 29 20:49:32 SuperLinux kernel: [160937.032280] ata2.00: error: { UNC }
Jan 29 20:49:32 SuperLinux kernel: [160937.032283] ata2.00: failed command: READ FPDMA QUEUED
Jan 29 20:49:32 SuperLinux kernel: [160937.032291] ata2.00: cmd 60/30:70:70:2c:79/00:00:00:00:00/40 tag 14 ncq dma 24576 in
Jan 29 20:49:32 SuperLinux kernel: [160937.032291]          res 41/40:70:f0:1e:76/00:00:00:00:00/40 Emask 0x9 (media error)
Jan 29 20:49:32 SuperLinux kernel: [160937.032295] ata2.00: status: { DRDY ERR }
Jan 29 20:49:32 SuperLinux kernel: [160937.032298] ata2.00: error: { UNC }
Jan 29 20:49:32 SuperLinux kernel: [160937.116881] ata2.00: configured for UDMA/100
Jan 29 20:49:32 SuperLinux kernel: [160937.116904] sd 1:0:0:0: [sda] tag#13 FAILED Result: hostbyte=DID_OK driverbyte=DRIVER_SENSE
Jan 29 20:49:32 SuperLinux kernel: [160937.116908] sd 1:0:0:0: [sda] tag#13 Sense Key : Medium Error [current] 
Jan 29 20:49:32 SuperLinux kernel: [160937.116912] sd 1:0:0:0: [sda] tag#13 Add. Sense: Unrecovered read error - auto reallocate failed
Jan 29 20:49:32 SuperLinux kernel: [160937.116916] sd 1:0:0:0: [sda] tag#13 CDB: Read(10) 28 00 00 76 1e e8 00 01 00 00
Jan 29 20:49:32 SuperLinux kernel: [160937.116918] print_req_error: I/O error, dev sda, sector 7741168
Jan 29 20:49:32 SuperLinux kernel: [160937.116948] sd 1:0:0:0: [sda] tag#14 FAILED Result: hostbyte=DID_OK driverbyte=DRIVER_SENSE
Jan 29 20:49:32 SuperLinux kernel: [160937.116950] sd 1:0:0:0: [sda] tag#14 Sense Key : Medium Error [current] 
Jan 29 20:49:32 SuperLinux kernel: [160937.116953] sd 1:0:0:0: [sda] tag#14 Add. Sense: Unrecovered read error - auto reallocate failed
Jan 29 20:49:32 SuperLinux kernel: [160937.116956] sd 1:0:0:0: [sda] tag#14 CDB: Read(10) 28 00 00 79 2c 70 00 00 30 00
Jan 29 20:49:32 SuperLinux kernel: [160937.116958] print_req_error: I/O error, dev sda, sector 7941232
Jan 29 20:49:32 SuperLinux kernel: [160937.116971] ata2: EH complete
Jan 29 20:49:36 SuperLinux kernel: [160940.724195] ata2.00: exception Emask 0x0 SAct 0x200000 SErr 0x0 action 0x0
Jan 29 20:49:36 SuperLinux kernel: [160940.724203] ata2.00: irq_stat 0x40000008
Jan 29 20:49:36 SuperLinux kernel: [160940.724209] ata2.00: failed command: READ FPDMA QUEUED
Jan 29 20:49:36 SuperLinux kernel: [160940.724218] ata2.00: cmd 60/08:a8:f0:1e:76/00:00:00:00:00/40 tag 21 ncq dma 4096 in
Jan 29 20:49:36 SuperLinux kernel: [160940.724218]          res 41/40:08:f0:1e:76/00:00:00:00:00/40 Emask 0x409 (media error) <F>
Jan 29 20:49:36 SuperLinux kernel: [160940.724223] ata2.00: status: { DRDY ERR }
Jan 29 20:49:36 SuperLinux kernel: [160940.724226] ata2.00: error: { UNC }
Jan 29 20:49:36 SuperLinux kernel: [160940.730479] ata2.00: configured for UDMA/100
Jan 29 20:49:36 SuperLinux kernel: [160940.730498] sd 1:0:0:0: [sda] tag#21 FAILED Result: hostbyte=DID_OK driverbyte=DRIVER_SENSE
Jan 29 20:49:36 SuperLinux kernel: [160940.730502] sd 1:0:0:0: [sda] tag#21 Sense Key : Medium Error [current] 
Jan 29 20:49:36 SuperLinux kernel: [160940.730506] sd 1:0:0:0: [sda] tag#21 Add. Sense: Unrecovered read error - auto reallocate failed
Jan 29 20:49:36 SuperLinux kernel: [160940.730510] sd 1:0:0:0: [sda] tag#21 CDB: Read(10) 28 00 00 76 1e f0 00 00 08 00
Jan 29 20:49:36 SuperLinux kernel: [160940.730513] print_req_error: I/O error, dev sda, sector 7741168
Jan 29 20:49:36 SuperLinux kernel: [160940.730541] ata2: EH complete
Jan 29 20:50:09 SuperLinux kernel: [160973.772271] JBD2: Detected IO errors while flushing file data on sda3-8
Jan 29 20:50:57 SuperLinux kernel: [161021.560495] JBD2: Detected IO errors while flushing file data on sda3-8

Then the retyped errors:

ata2.00: exception Emask 0x0 SAct 0xc00000 SErr 0x0 action 0x0
ata2.00: irq_stat 0x40000008
ata2.00: failed command: READ FPDMA QUEUED
ata2.00: cmd 60/e0:b8:20:e8:17/00:00:00:00:00/40 tag 23 ncq dma 114688 in res 41/40:e0:60:e8:17/00:00:00:00:00/40 Emask 0x409 (media error) <F>
ata2.00: status: { DRDY ERR }
ata2.00: error: { UNC }
print_req_error: I/O error, dev sda, sector 1566816
ata2.00: exception Emask 0x0 SAct 0x40000000 SErr 0x0 action 0x0
ata2.00: irq_stat 0x40000008
ata2.00: failed command: READ FPDMA QUEUED
ata2.00: cmd 60/08:f0:60:e8:17/00:00:00:00:00/40 tag 30 ncq dma 4096 in res 41/40:08:60:e8:17/00:00:00:00:00/40 Emask 0x409 (media error) <F>
ata2.00: status: { DRDY ERR }
ata2.00: error: { UNC }
print_req_error: I/O error, dev sda, sector 1566816
Kernel panic - not syncing: Attempted to kill init! exitcode=0x00000007

CPU: 1 PID: 1 Comm: init Not tainted 4.19.0-5-amd64 #1 Debian 4.19.37-5+deb10u2
Hardware name: Dell Inc. Inspiron 15 7000 Gaming/0TXG2N, BIOS 1.8.1 08/15/2018
Call Trace:
dump_stack+0x5c/0x80
panic+0xe7/0x24a
do_exit.cold.22+0x26/0x7f
do_group_exit+0x3a/0xa0
get_signal+0x132/0x730
? page_fault+0x8/0x30
do_signal+0x36/0x6e0
? force_sig_info_fault+0xaf/0x100
? page_fault+0x8/0x30
exit_to_usermode_loop+0x89/0xf0
prepare_exit_to_usermode+0x55/0x60
retint_user+0x8/0x8
RIP: 0033:0x7ff890bd5000
Code: Bad RIP value.
RSP: 002b:00007ffc6a888c08 EFLAGS: 00010206
RAX: 00007ff890bd5000 RBX: 00007ff890d41510 RCX: 00007ffc6a888c98
RDX: 00007ffc6a888c98 RSI: 00007ffc6a888c88 RDI: 0000000000000001
RBP: 0000000000000001 R08: 00007ff890d414e0 R09: 000000000000002f
R10: fffffffffffff902 R11: 00007ff891432890 R12: 00007ffc6a888c88
R13: 00007ffc6a888c98 R14: 00007ff89153e190 R15: 0000000000000000
Kernel Offset: 0x2c400000 from 0xffffffff81000000 (relocation range: 0xffffffff80000000-0xffffffffbfffffff)
---[end Kernel panic - not syncing: Attempted to kill init! exitcode=0x00000007
]---
linux
linux-kernel
boot
debian-buster

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