Configuring clock peripherals seems to ignore half of my configuration bits.

I'm configuring the RCC to activate clock for peripherals. However, when I use the SFRs to check registers, it doesn't match what I programmed.

RCC->AHBENR = (uint32_t) 0x000C0004;

When I check the AHBENR,the value is

0x14

I previously had only 0x00000014, so I am not sure if I'm compiling a previous build or why is half of my code being ignored?

In pseudo code, here is what the RCC does. It runs only once:

//Initialises HSE, CSS, HSI

//wait until HSE is ready

//Configure PLL to choose SYSCLK, fix the multiplicator at chosen value

//Fix PREDIV

//Activate PLL

**//Configure clock for peripherals. <- problem here.**