Importing MATLAB engine on Python using TextMate - Python quits unexpectedly
I am trying to call a MATLAB function from a Python script. I installed the MATLAB Engine API as instructed by the Mathworks website, and then importing the engine in my script using:
import matlab.engine
(using TextMate on Mac OS.) However I was getting an error saying the engine installation was corrupted. I realised that Python 3.5 is not supported by the engine, so I uninstalled Python and installed version 2.7. From this point on every time I try to import the engine that way, Python quits unexpectedly. Weirdly enough, it ONLY happens using TextMate, but not using IDLE, for example. This is the error I get:
Process: Python [3609] Path: /System/Library/Frameworks/Python.framework/Versions/2.7/Resources/Python.app/Contents/MacOS/Python Identifier: Python Version: 2.7.10 (2.7.10) Code Type: X86-64 (Native) Parent Process: ??? [3604] Responsible: Python [3609] User ID: 503
Date/Time: 2016-03-30 17:58:26.469 +0200 OS Version: Mac OS X 10.11.3 (15D21) Report Version: 11 Anonymous UUID: F829ADA5-2D7E-CDCB-4599-4A9C227DE9C5
Time Awake Since Boot: 3400 seconds
System Integrity Protection: enabled
Crashed Thread: 0 Dispatch queue: com.apple.main-thread
Exception Type: EXC_BAD_ACCESS (SIGSEGV) Exception Codes: KERN_INVALID_ADDRESS at 0x0000000000000000 Exception Note: EXC_CORPSE_NOTIFY
VM Regions Near 0:
-->
__TEXT 000000010fd24000-000000010fd25000 [ 4K] r-x/rwx SM=COW /System/Library/Frameworks/Python.framework/Versions/2.7/Resources/Python.app/Contents/MacOS/Python
Thread 0 Crashed:: Dispatch queue: com.apple.main-thread 0 ??? 000000000000000000 0 + 0 1 libpython2.7.dylib 0x0000000110e7fb17 PyEval_GetGlobals + 23 2 libpython2.7.dylib 0x0000000110ea3da2 PyImport_Import + 50 3 libpython2.7.dylib 0x0000000110ea3fd8 PyImport_ImportModule + 40 4 matlabengineforpython2_7.so 0x000000011053dcf7 initmatlabengineforpython2_7 + 23 5 org.python.python 0x000000010fdc44b3 _PyImport_LoadDynamicModule + 140 6 org.python.python 0x000000010fdc31b1 0x10fd29000 + 631217 7 org.python.python 0x000000010fdc2d77 0x10fd29000 + 630135 8 org.python.python 0x000000010fdc1f5b PyImport_ImportModuleLevel + 1139 9 org.python.python 0x000000010fda7a0a 0x10fd29000 + 518666 10 org.python.python 0x000000010fdafa0b PyEval_EvalFrameEx + 13400 11 org.python.python 0x000000010fdac3c1 PyEval_EvalCodeEx + 1583 12 org.python.python 0x000000010fdb24ae 0x10fd29000 + 562350 13 org.python.python 0x000000010fdaf30c PyEval_EvalFrameEx + 11609 14 org.python.python 0x000000010fdac3c1 PyEval_EvalCodeEx + 1583 15 org.python.python 0x000000010fdabd8c PyEval_EvalCode + 54 16 org.python.python 0x000000010fdc0a37 PyImport_ExecCodeModuleEx + 241 17 org.python.python 0x000000010fdc374f 0x10fd29000 + 632655 18 org.python.python 0x000000010fdc39d4 0x10fd29000 + 633300 19 org.python.python 0x000000010fdc31b1 0x10fd29000 + 631217 20 org.python.python 0x000000010fdc2d77 0x10fd29000 + 630135 21 org.python.python 0x000000010fdc1f93 PyImport_ImportModuleLevel + 1195 22 org.python.python 0x000000010fda7a0a 0x10fd29000 + 518666 23 org.python.python 0x000000010fd33202 PyObject_Call + 99 24 org.python.python 0x000000010fdb1e83 PyEval_CallObjectWithKeywords + 165 25 org.python.python 0x000000010fdae2ec PyEval_EvalFrameEx + 7481 26 org.python.python 0x000000010fdac3c1 PyEval_EvalCodeEx + 1583 27 org.python.python 0x000000010fdabd8c PyEval_EvalCode + 54 28 org.python.python 0x000000010fdcba42 0x10fd29000 + 666178 29 org.python.python 0x000000010fdcbae5 PyRun_FileExFlags + 133 30 org.python.python 0x000000010fdcb634 PyRun_SimpleFileExFlags + 698 31 org.python.python 0x000000010fddd011 Py_Main + 3137 32 libdyld.dylib 0x00007fff8d4725ad start + 1
Thread 1: 0 libsystem_kernel.dylib 0x00007fff88c8d6de
__workq_kernreturn + 10 1 libsystem_pthread.dylib 0x00007fff884f7729 _pthread_wqthread + 1283 2 libsystem_pthread.dylib 0x00007fff884f5365 start_wqthread + 13
Thread 2:: Dispatch queue: com.apple.libdispatch-manager 0 libsystem_kernel.dylib 0x00007fff88c8dff6 kevent_qos + 10 1 libdispatch.dylib 0x00007fff8e105099 _dispatch_mgr_invoke
+ 216 2 libdispatch.dylib 0x00007fff8e104d01 _dispatch_mgr_thread + 52
Thread 3: 0 libsystem_kernel.dylib 0x00007fff88c8d6de
__workq_kernreturn + 10 1 libsystem_pthread.dylib 0x00007fff884f7729 _pthread_wqthread + 1283 2 libsystem_pthread.dylib 0x00007fff884f5365 start_wqthread + 13
Thread 4: 0 libsystem_kernel.dylib 0x00007fff88c8d6de
__workq_kernreturn + 10 1 libsystem_pthread.dylib 0x00007fff884f7729 _pthread_wqthread + 1283 2 libsystem_pthread.dylib 0x00007fff884f5365 start_wqthread + 13
Thread 0 crashed with X86 Thread State (64-bit): rax: 0x0000000110f68540 rbx: 0x0000000113829030 rcx: 0x0000000000000008 rdx: 0x00000001138290c0 rdi: 0x0000000000000000 rsi: 0x0000000000000000 rbp: 0x00007fff4feda420 rsp: 0x00007fff4feda418 r8: 0x0000000110eaad4c r9: 0x0000000110f7f0b0 r10: 0x0000000000000000 r11: 0x000000000294015c r12: 0x0000000000000000 r13: 0x0000000000000000 r14: 0x0000000113829030 r15: 0x000000010fe613f8 rip: 0x0000000000000000 rfl: 0x0000000000010206 cr2: 0x0000000000000000 Logical CPU: 3 Error Code: 0x00000014 Trap Number: 14
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0x7fff8fe50000 - 0x7fff8fe58ffb libsystem_dnssd.dylib (625.20.4) <945B5FB1-DA91-3D45-A961-A8FAD53C1E7E> /usr/lib/system/libsystem_dnssd.dylib
0x7fff9032c000 - 0x7fff90362fff libssl.0.9.8.dylib (59) <DC4B66A8-AFED-33A9-A5B8-D2088C6EF5B2> /usr/lib/libssl.0.9.8.dylib
0x7fff90525000 - 0x7fff90528ff7 libsystem_sandbox.dylib (460.30.1) <3E0036AF-FC64-3352-8DA4-6B550C2C2562> /usr/lib/system/libsystem_sandbox.dylib
0x7fff90693000 - 0x7fff90694ffb libremovefile.dylib (41) <B8D1A5FC-CFD5-3AAB-8A10-14DDC129710A> /usr/lib/system/libremovefile.dylib
0x7fff906e2000 - 0x7fff906e3fff libDiagnosticMessagesClient.dylib (100) <4243B6B4-21E9-355B-9C5A-95A216233B96> /usr/lib/libDiagnosticMessagesClient.dylib
0x7fff90b18000 - 0x7fff90b2fff7 libsystem_asl.dylib (322.30.1) <9B500E4E-E462-321E-828E-5524DC984C1B> /usr/lib/system/libsystem_asl.dylib
0x7fff914ff000 - 0x7fff91528fff libxpc.dylib (756.20.4) <61AB4610-9304-354C-9E9B-D57198AE9866> /usr/lib/system/libxpc.dylib
0x7fff91d2e000 - 0x7fff91d44ff7 libsystem_coretls.dylib (83.20.8) <75C97D88-0A63-3093-AE83-DE33EB7405CE> /usr/lib/system/libsystem_coretls.dylib
0x7fff925e3000 - 0x7fff925e8ff7 libmacho.dylib (875.1) <CB745E1F-4885-3F96-B38B-2093DF488FD5> /usr/lib/system/libmacho.dylib
0x7fff92613000 - 0x7fff9263cfff libc++abi.dylib (125) <DCCC8177-3D09-35BC-9784-2A04FEC4C71B> /usr/lib/libc++abi.dylib
0x7fff92756000 - 0x7fff92758fff libsystem_coreservices.dylib (19.2) <1B3F5AFC-FFCD-3ECB-8B9A-5538366FB20D> /usr/lib/system/libsystem_coreservices.dylib
0x7fff931ea000 - 0x7fff93555657 libobjc.A.dylib (680) <58CB8CFC-7DBD-3A53-BD72-A42FF799B21E> /usr/lib/libobjc.A.dylib
0x7fff93921000 - 0x7fff93950ffb libsystem_m.dylib (3105) <26655445-CA97-321E-B221-801CB378D1AA> /usr/lib/system/libsystem_m.dylib
0x7fff9691a000 - 0x7fff9696dff7 libc++.1.dylib (120.1) <8FC3D139-8055-3498-9AC5-6467CB7F4D14> /usr/lib/libc++.1.dylib
0x7fff96b11000 - 0x7fff96b12fff libsystem_blocks.dylib (65) <49D42329-7DE9-3413-92C3-A473A7E9CF35> /usr/lib/system/libsystem_blocks.dylib
0x7fff96b79000 - 0x7fff96b81fff libsystem_networkextension.dylib (385.20.6) <DC8A102A-BF02-31A4-8914-65C34DF6B592> /usr/lib/system/libsystem_networkextension.dylib
0x7fff98fb8000 - 0x7fff98fc0fe7 libsystem_platform.dylib (74.10.3) <D3A27E10-7F08-3603-ACC8-7A92B2C04BAB> /usr/lib/system/libsystem_platform.dylib
0x7fff99f55000 - 0x7fff99f55ff7 liblaunch.dylib (756.20.4) <EDF719D6-D2BB-38DD-8C94-4272BEFDA2CD> /usr/lib/system/liblaunch.dylib
0x7fff9a50d000 - 0x7fff9a511fff libcache.dylib (75) <6B245C0A-F3EA-383B-A542-5B0D0456A41B> /usr/lib/system/libcache.dylib
0x7fff9a512000 - 0x7fff9a512ff7 libunc.dylib (29) <1D0F8265-F026-3CBD-93D3-F8DF14FFCE68> /usr/lib/system/libunc.dylib
0x7fff9bda0000 - 0x7fff9bda5ff3 libunwind.dylib (35.3) <124E0F05-2350-3774-A32C-7F5BF38EDE73> /usr/lib/system/libunwind.dylib
0x7fff9c829000 - 0x7fff9c839fff libbsm.0.dylib (34) <7E14504C-A8B0-3574-B6EB-5D5FABC72926> /usr/lib/libbsm.0.dylib
External Modification Summary: Calls made by other processes targeting this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0 Calls made by this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0 Calls made by all processes on this machine:
task_for_pid: 2381
thread_create: 0
thread_set_state: 0
VM Region Summary: ReadOnly portion of Libraries: Total=157.6M resident=0K(0%) swapped_out_or_unallocated=157.6M(100%) Writable regions: Total=62.4M written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=62.4M(100%)
VIRTUAL REGION REGION TYPE SIZE COUNT (non-coalesced)
=========== ======= ======= Activity Tracing 2048K 2 Dispatch continuations 8192K 2 Kernel Alloc Once 4K 2 MALLOC
37.4M 11 MALLOC guard page 16K 4 Process Corpse Info 2048K 2 STACK GUARD
56.0M 6 Stack 9824K 6 VM_ALLOCATE 2836K 10
__DATA 5300K 113
__LINKEDIT 103.2M 54
__TEXT 54.4M 101
__UNICODE 552K 2 shared memory 28K 6
=========== ======= ======= TOTAL 281.2M 307
Model: MacBookPro9,2, BootROM MBP91.00D3.B0C, 2 processors, Intel Core i7, 2.9 GHz, 8 GB, SMC 2.2f41 Graphics: Intel HD Graphics 4000, Intel HD Graphics 4000, Built-In Memory Module: BANK 0/DIMM0, 4 GB, DDR3, 1600 MHz, 0x80AD, 0x484D54333531533643465238432D50422020 Memory Module: BANK 1/DIMM0, 4 GB, DDR3, 1600 MHz, 0x80AD, 0x484D54333531533643465238432D50422020 AirPort: spairport_wireless_card_type_airport_extreme (0x14E4, 0xF5), Broadcom BCM43xx 1.0 (7.21.94.136.1a1) Bluetooth: Version 4.4.3f4 16616, 3 services, 27 devices, 1 incoming serial ports Network Service: Wi-Fi, AirPort, en1 Serial ATA Device: Samsung SSD 840 EVO 120GB, 120.03 GB Serial ATA Device: APPLE HDD HTS547575A9E384, 750.16 GB USB Device: USB 2.0 Bus USB Device: Hub USB Device: FaceTime HD Camera (Built-in) USB Device: USB 2.0 Bus USB Device: Hub USB Device: Hub USB Device: Apple Internal Keyboard / Trackpad USB Device: IR Receiver USB Device: BRCM20702 Hub USB Device: Bluetooth USB Host Controller USB Device: USB 3.0 Bus Thunderbolt Bus: MacBook Pro, Apple Inc., 25.1
Michele Tonutti
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